Protein ZmCA5P1 | |
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Information | |
TF Name: | ZmCA5P1 |
Species: | Maize |
TF Family: | CCAAT-HAP5 |
Gene Name(Synonym): | CA5P1 |
Uniprot ID: | A0A1D6PDQ1 |
Subgenome: | 2 |
ZmCA5P1 is a protein in the CCAAT-HAP5 family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Overview of domains present in v5 transcripts | ||
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NF-YB | NF-YC | |
Zm00001eb434020_T002 | ||
Zm00001eb434020_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d026648 | DAPseq | sequence | fimo | position | |
Zm00001d026648 | DAPseq | sequence | fimo | position | |
Zm00001d026648 | ChIPseq | sequence | fimo | position | |
Zm00001d026648 | PChIPseq | sequence | fimo | position |
MRQARPYSGIFCGGVSARTGPHALPLARIKKIMKRSAGEAAAAADGGARMISGEAPVVFSKACELFVAELTRRAWAATLD
GKRRTVHREDVATAVHNTDLFDFLVDVVTADTAGGTGGGGHDGNGAL
MRQARPYSGIFCGGVSARTGPHALPLARIKKIMKRSAGEAAAAADGGARMISGEAPVVFSKACELFVAELTRRAWAATLD
GKRRTVHREDVATAVHNTDLFDFLVDVVTADTAGGTGGGGHDGNGAL
MRQARPYSGIFCGGVSARTGPHALPLARIKKIMKRSAGEAAAAADGGARMISGEAPVVFSKACELFVAELTRRAWAATLD
GKRRTVHREDVATAVHNTDLFDFLVDVVTADTAGGTGGGGHDGNGAL
MRQARPYSGIFCGGVSARTGPHALPLARIKKIMKRSAGEAAAAADGGARMISGEAPVVFSKACELFVAELTRRAWAATLD
GKRRTVHREDVATAVHNTDLFDFLVDVVTADTAGGTGGGGHDGNGAL
MRQARPYSGIFCGGVSARTGPHALPLARIKKIMKRSAGEAAAAADGGARMISGEAPVVFSKACELFVAELTRRAWAATLD
GKRRTVHREDVATAVHNTDLFDFLVDVVTADTAGGTGGGGHDGNGAL
MRQARPYSGIFCGGVSARTGPHALPLARIKKIMKRSAGEAAAAADGGARMISGEAPVVFSKACELFVAELTRRAWAATLD
GKRRTVHREDVATAVHNTDLFDFLVDVVTADTAGGTGGGGHDGNGAL
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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NF-YB |
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NF-YC |
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Hover here to show all domains |
GAAACTAACCATGAGGCAGGCGAGG...
GAAACTAACCATGAGGCAGGCGAGGCCGTACTCGGGGATCTTCTGCGGCGGGGTGTCGGCGCGGACGGGACCGCACGCGCTGCCGCTGGCGCGCATCAAGAAGATCATGAAGCGCTCCGCGGGGGAGGCGGCGGCCGCCGCGGACGGCGGCGCCAGGATGATCTCCGGCGAGGCGCCCGTTGTGTTCTCCAAGGCGTGCGAGCTCTTCGTCGCCGAGCTCACGCGCCGCGCCTGGGCCGCCACGCTCGACGGCAAGCGCCGCACCGTGCACAGGGAGGACGTCGCCACGGCCGTGCACAACACCGACCTCTTCGACTTCCTCGTCGACGTCGTCACGGCGGACACTGCTGGTGGAACCGGCGGCGGCGGGCACGACGGCAACGGCGCGCTCTAA
MRQARPYSGIFCGGVSARTGPHALPLARIKKIMKRSAGEAAAAADGGARMISGEAPVVFSKACELFVAELTRRAWAATLD
GKRRTVHREDVATAVHNTDLFDFLVDVVTADTAGGTGGGGHDGNGAL
GCGCCGGCCAGTTCACCGCCCATCT...
GCGCCGGCCAGTTCACCGCCCATCTCGATCGGTGAAATTGCACCGGCGATCGACGTACGGTAGGTCGGTAGCAGCAAAGAAACTAACCATGAGGCAGGCGAGGCCGTACTCGGGGATCTTCTGCGGCGGGGTGTCGGCGCGGACGGGACCGCACGCGCTGCCGCTGGCGCGCATCAAGAAGATCATGAAGCGCTCCGCGGGGGAGGCGGCGGCCGCCGCGGACGGCGGCGCCAGGATGATCTCCGGCGAGGCGCCCGTTGTGTTCTCCAAGGCGTGCGAGCTCTTCGTCGCCGAGCTCACGCGCCGCGCCTGGGCCGCCACGCTCGACGGCAAGCGCCGCACCGTGCACAGGGAGGACGTCGCCACGGCCGTGCACAACACCGACCTCTTCGACTTCCTCGTCGACGTCGTCACGGCGGACACTGCTGGTGGAACCGGCGGCGGCGGGCACGACGGCAACGGCGCGCTCTAAGCTGCATGGGGACGAATTTTCAGCCGTTTGCTTGAGCCCACGATGCTCTAGTGCAGTGACTCGTAGTCGTAGCAACTTCTCTCATGCAATCCTATATGCTACTAGATCTCATATACGTACTCATTCTCTGAAAATGATACGAACCCCAACCAATAAGCACAGCGCCGACTGAAAACGTTGAGAAATTCACATGATTTCAGTTTCAGCGGCCTTTGTGAAACGCAGGGTTTCACCAAAATTATGTCACAAAAAATTCGTTTAAAACGGCAGCTCGACCAGATCCATGGCCTGCTTGTCACCTCCTCCTCCCTCCGCCGCCGACGCGGTGCACTGCCGCGTCGTCAAGGAGGGGCTCGCCGCCGTGCCGGCGTCGGCAGCCCGCTGCTAGCGGTCTACGTCTCTGGTGGGTCGCTGGGTGACACGAGACGGGTGGGTGTTCGACGGTTTCCACGCGACCGAGCCAGGTCCGTCGGCCTCTCCAACAGGATGGTGTTGGTGTACGTCAAGGCCGGAGACATGAGGAGTGCGCAGGAGGTGTTGGACGCGATGGCGGTCAGGGACGTCGTGTCGTGGAACGCGATGCTTAACCCGTACGTCAAAACGACGGACG
MRQARPYSGIFCGGVSARTGPHALPLARIKKIMKRSAGEAAAAADGGARMISGEAPVVFSKACELFVAELTRRAWAATLD
GKRRTVHREDVATAVHNTDLFDFLVDVVTADTAGGTGGGGHDGNGAL
ATGAGGCAGGCGAGGCCGTACTCGG...
ATGAGGCAGGCGAGGCCGTACTCGGGGATCTTCTGCGGCGGGGTGTCGGCGCGGACGGGACCGCACGCGCTGCCGCTGGCGCGCATCAAGAAGATCATGAAGCGCTCCGCGGGGGAGGCGGCGGCCGCCGCGGACGGCGGCGCCAGGATGATCTCCGGCGAGGCGCCCGTTGTGTTCTCCAAGGCGTGCGAGCTCTTCGTCGCCGAGCTCACGCGCCGCGCCTGGGCCGCCACGCTCGACGGCAAGCGCCGCACCGTGCACAGGGAGGACGTCGCCACGGCCGTGCACAACACCGACCTCTTCGACTTCCTCGTCGACGTCGTCACGGCGGACACTGCTGGTGGAACCGGCGGCGGCGGGCACGACGGCAACGGCGCGCTCTAA
MRQARPYSGIFCGGVSARTGPHALPLARIKKIMKRSAGEAAAAADGGARMISGEAPVVFSKACELFVAELTRRAWAATLD
GKRRTVHREDVATAVHNTDLFDFLVDVVTADTAGGTGGGGHDGNGAL
ATGCGACGCACCGCGCCACGCCACG...
ATGCGACGCACCGCGCCACGCCACGCGCTCCTTCCTCCACCTGCGTACGTATATAAATATGTTAGAGGCACCTCGCGCCCTCTGCGCCGGCCAGTTCACCGCCCATCTCGATCGGTGAAATTGCACCGGCGATCGACGTACGGTAGGTCGGTAGCAGCAAAGAAACTAACCATGAGGCAGGCGAGGCCGTACTCGGGGATCTTCTGCGGCGGGGTGTCGGCGCGGACGGGACCGCACGCGCTGCCGCTGGCGCGCATCAAGAAGATCATGAAGCGCTCCGCGGGGGAGGCGGCGGCCGCCGCGGACGGCGGCGCCAGGATGATCTCCGGCGAGGCGCCCGTTGTGTTCTCCAAGGCGTGCGAGCTCTTCGTCGCCGAGCTCACGCGCCGCGCCTGGGCCGCCACGCTCGACGGCAAGCGCCGCACCGTGCACAGGGAGGACGTCGCCACGGCCGTGCACAACACCGACCTCTTCGACTTCCTCGTCGACGTCGTCACGGCGGACACTGCTGGTGGAACCGGCGGCGGCGGGCACGACGGCAACGGCGCGCTCTAA
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